YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4741732
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	25	0.90
Transmembrane Helix	26	45	0.94
Non-Cytoplasmic	46	61	0.78
Transmembrane Helix	62	83	0.60
Cytoplasmic	84	104	0.58
Transmembrane Helix	105	124	0.71
Non-Cytoplasmic	125	165	0.56
Transmembrane Helix	166	189	0.87
Cytoplasmic	190	201	0.87
Transmembrane Helix	202	222	0.91
Non-Cytoplasmic	223	231	0.79
Transmembrane Helix	232	255	0.92
Cytoplasmic	256	513	0.99
Transmembrane Helix	514	533	0.74
Non-Cytoplasmic	534	559	0.74
Transmembrane Helix	560	581	0.92
Cytoplasmic	582	600	0.75
Transmembrane Helix	601	621	0.68
Non-Cytoplasmic	622	651	0.63
Transmembrane Helix	652	677	0.87
Cytoplasmic	678	680	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTVAPITN TLATVATAAA SVDDKVWMVI LGFIIAFVLA FSVGANDVAN SFGTAVGSGV  60
   61 VTLKQACILA SIFETVGSAL LGAKVSETIR KGLIDVEMYN ETQDLLMAGS VSAMFGSAVW 120
  121 QLMASFLKLP ISGTHCIVGA TIGFSLVAKG QKGVKWSELI KIVMSWFVSP LLSGIMSGIL 180
  181 FFLVRAFILR KADPVPNGLR ALPVFYACTI GINLFSIMYT GAPLLGFDKL PLWGTILISV 240
  241 GCAVFCALFV WFFVCPRMKR KIEREIKSSP SESPLMEKKN NLKEDHEETK MSLGDVENGN 300
  301 SVSEVACATG PLRAVVEERT VSFKLGDLEE APERERLPMD LKEETSIDGT INGAVQLPNG 360
  361 NLVQFSQTVS NQINSSGHYQ YHTVHKDSGL YKELLHKLHL AKVGDCMGDS GDKPLRRNNS 420
  421 YTSYTMAICG MPLDSFRAKE GEQKGEETET LTWPNVDTKK RIRMDSYTSY CNAVSDLHSE 480
  481 SEMDMNVKAE MGNRKGSNGS LEEWCDQDKP EVSLLFQFLQ ILTACFGSFA HGGNDVSNAI 540
  541 GPLVALYLVY TTQDVSTKIA TPIWLLLYGG VGICIGLWVW GRRVIQTMGK DLTPITPSSG 600
  601 FSIELASALT VVVASNIGLP ISTTHCKVGS VVSVGWLRSK KAVDWRLFRN IFMAWFVTVP 660
  661 ISGVISAAIM AVFKFIILKV