YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45709109
Protein type:	Transmembrane
Type Confidence:	0.60
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QRLCKLLIYV SALLSSLILL RYRLLSEMSL RTAAWGFGAR LRGVLQPSTA AVAARRAFAP  60
   61 AAPQAVQSVL EAELDSIRAA GTWKGERVIT SKQGPHICVD GSRGDILNFC ANNYLGLSSH 120
  121 PEVVKAGVEA LQKYGAGLSS VRFICGTQDI HKNLEEKLAQ FHEREDCILY ASCFDANAGL 180
  181 FEVLLGPDDA VLSDELNHAS IIDGIRLCRA KRFRYKHMDL NDLEEKLKES QSSRLRLVVT 240
  241 DGVFSMDGDV APLKGICDLA EQYGAMVFID ECHATGFMGA RGRGTDELLG VMDRVQIVNS 300
  301 TLGKALGGAA GGYTVGPKAL IELLRQRSRP YLFSNSLPPP VVGCATRAVE LLLASNEIAQ 360
  361 SMAAKTMRFR NNMTQAGFTI SGSAHPICPV MLGDARLASL MADDMLKLGV YVIGFSYPVV 420
  421 PKGKARIRVQ ISAAHTDEDI DRTVDAFIQT GRKHGVIS

Type	Start	End	Confidence
Cytoplasmic	1	5	0.46
Transmembrane Helix	6	22	0.52
Non-Cytoplasmic	23	458	0.90