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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|4713925
Protein type: Transmembrane
Type Confidence: 0.92
Topology Confidence: 0.69
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHLHLLAVEK TPPSPFPNPT PTPSASPSGH TGAAGESQLD LASQTESQLQ LGLPLASGYG  60
   61 LGLGLGLGLG LGLGQELVAD HSTTVAPVSV AGPGRLGRSI NGSGGSHHHH HLHHHYSPYH 120
  121 HAHPYHPPHP HAPHHHHHHH PPYPYPPAGP HPPAMVTSSS TSPTGNGWSS STGDFKGITA 180
  181 VATATGGGVG GATQGATAST GATAAEVLAV SSSASVGSSS PTGGASNGTA HSGHSGHTGG 240
  241 HSSSTASNNN NNNNNGASNS NSNNNNAVHQ DLLWMERLVQ KRQQEHPGEL VRTSNPYFLC 300
  301 SALPAHWRSN KTLPMAFKVV ALAEVGDGTY VTIRAGNDEN CCADVRNFTT QMKNDVAKFN 360
  361 DLRFVGRSGR GKSFTLTITV ATSPPQVATY AKAIKVTVDG PREPRSKTSP TGGPHYRALG 420
  421 LGQRPYIDGF PSTKALHELE SLRRSAKVAA VTTAAAAAAT AASAANAVAA AAAAVAVTPT 480
  481 GGGGGVAAGG VAGGAGAGLV QQLSSNYSSP NSTINSDCQV YKPNAPHIQA AEMMGAGEWT 540
  541 NGSSSSAAAY YHSHAHHPHA HHAHAHLQHQ MALPPPPPPP AAAPVSVGVG GNGATMGMGM 600
  601 GVGVGMGMNH YGGGYDSANS LEAGQYAAHL PAVLPEMHGH GFATDPYQTA GYGGGNTGGG 660
  661 SASKSELDYG GSYNQAWSNG YQNYQYGSCL ATAQYGPQAA PPPQPPPPPP VVLCPQLYST 720
  721 VNQNQIHLHL HSSEKLEQYL GTATSADHLT IGSLTGSSRS SIEIGQDQYH QQVHHAQQQQ 780
  781 QQQQQQQQVH HPQQQQVESA GEVGGSGAGG VESAREEDVG DLSQVWRPY

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle