YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45862334
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	53	0.83
Transmembrane Helix	54	68	0.40
Non-Cytoplasmic	69	96	0.53
Transmembrane Helix	97	120	0.88
Cytoplasmic	121	172	0.57
Transmembrane Helix	173	194	0.68
Non-Cytoplasmic	195	197	0.45
Transmembrane Helix	198	218	0.82
Cytoplasmic	219	283	0.92
Transmembrane Helix	284	305	0.83
Non-Cytoplasmic	306	312	0.72
Transmembrane Helix	313	332	0.86
Cytoplasmic	333	669	0.98
Transmembrane Helix	670	692	0.89
Non-Cytoplasmic	693	729	0.95
Transmembrane Helix	730	754	0.86
Cytoplasmic	755	797	0.97
Transmembrane Helix	798	821	0.82
Non-Cytoplasmic	822	825	0.59
Transmembrane Helix	826	846	0.83
Cytoplasmic	847	909	0.84
Transmembrane Helix	910	934	0.87
Non-Cytoplasmic	935	940	0.66
Transmembrane Helix	941	960	0.82
Cytoplasmic	961	1288	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPVHTEVKP NPLQDANLCS RLFCRYWDKE VLRAKKDARK PSLTKAIVKC YWKSYLILGI  60
   61 FTLIEETTRV VQPIFLGKII DYFEKYDSDD SAALHTAYGY AAVLSLCTLI LAILHHLYFY 120
  121 HVQCAGMRIR VAMCHMIYRK ALRLSNSAMG KTTTGQIVNL LSNDVNKFDQ VTIFLHFLWA 180
  181 GPLQAIGVTI LLWVEIGISC LAGLAILVIL LPLQSCIGKL FSSLRSKTAA FTDARFRTMN 240
  241 EVITGMRIIK MYAWEKSFAD LITNLRKKEI SKILGSSYLR GMNMASFFIA NKVILFVTFT 300
  301 TYVLLGNKIT SSHVFVAMTL YGAVRLTVTL FFPSAIERVS EAVVSVRRIK NFLLLDELPE 360
  361 RKAQEPSDGK AIVHVQDFTA FWDKALDTPT LQGLSFTARP GELLAVVGPV GAGKSSLLSA 420
  421 VLGELPPTSG LVSVHGRIAY VSQQPWVFSG TVRSNILFGR KYEKERYEKV IKACALKKDL 480
  481 QLLEDGDLTV IGDRGATLSG GQKARVNLAR AVYQDADIYL LDDPLSAVDA EVGKHLFQLC 540
  541 ICQTLHEKIT ILVTHQLQYL KAASHILILK DGEMVQKGTY TEFLKSGVDF GSLLKKENEE 600
  601 AEPSPVPGTP TLRNRTFSEA SIWSQQSSRP SLKDGVPDAQ DAENTQAAQP EESRSEGRIG 660
  661 FKAYKNYFSA GASWFFIIFL VLLNLMGQVF YVLQDWWLSH WANRQGALND TKNANGNVTG 720
  721 TLDLSWYLGI YTGLTAVTVL FGIARSLLVF YVLVNASQTL HNRMFESILK APVLFFDRNP 780
  781 IGRILNRFSK DIGHMDDLLP LTFLDFIQTL LLVVSVIAVA AAVIPWILIP LVPLSIIFVV 840
  841 LRRYFLETSR DVKRLESTTR SPVFSHLSSS LQGLWTIRAY KAEERCQELF DAHQDLHSEA 900
  901 WFLFLTTSRW FAVRLDAICA VFVIVVAFGS LVLAKTLDAG QVGLALSYSL TLMGMFQWSV 960
  961 RQSAEVENMM ISVERVIEYT DLEKEAPWEC RKRPPPGWPH EGVIVFDNVN FTYSLDGPLV1020
 1021 LKHLTALIKS REKVGIVGRT GAGKSSLISA LFRLSEPEGK IWIDKILTTE IGLHDLRKKM1080
 1081 SIIPQEPVLF TGTMRKNLDP FNEHSDEELW KALEEVQLKE AIEDLPGKMD TELAESGSNF1140
 1141 SVGQRQLVCL ARAILKKNRI LIIDEATANV DPRTDELIQQ KIREKFAQCT VLTIAHRLNT1200
 1201 IIDSDKIMVL DSGRLREYDE PYVLLQNPES LFYKMVQQLG KGEAAALTET AKQVYFRRNY1260
 1261 PDIAFSSPAV MSTSNGQPSA LTIFETAL