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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|45862332, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.41
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPVHTEVKP NPLQDANLCS RLFFWWLNPL FKAGHKRRLE EDDMFSVLPE DRSKHLGEEL  60
   61 QGYWDKEVLR AKKDARKPSL TKAIVKCYWK SYLILGIFTL IEETTRVVQP IFLGKIIDYF 120
  121 EKYDSDDSAA LHTAYGYAAV LSLCTLILAI LHHLYFYHVQ CAGMRIRVAM CHMIYRKALR 180
  181 LSNSAMGKTT TGQIVNLLSN DVNKFDQVTI FLHFLWAGPL QAIGVTILLW VEIGISCLAG 240
  241 LAILVILLPL QSCIGKLFSS LRSKTAAFTD ARFRTMNEVI TGMRIIKMYA WEKSFADLIT 300
  301 NLRKKEISKI LGSSYLRGMN MASFFIANKV ILFVTFTTYV LLGNKITSSH VFVAMTLYGA 360
  361 VRLTVTLFFP SAIERVSEAV VSVRRIKNFL LLDELPERKA QEPSDGKAIV HVQDFTAFWD 420
  421 KALDTPTLQG LSFTARPGEL LAVVGPVGAG KSSLLSAVLG ELPPTSGLVS VHGRIAYVSQ 480
  481 QPWVFSGTVR SNILFGRKYE KERYEKVIKA CALKKDLQLL EDGDLTVIGD RGATLSGGQK 540
  541 ARVNLARAVY QDADIYLLDD PLSAVDAEVG KHLFQLCICQ TLHEKITILV THQLQYLKAA 600
  601 SHILILKDGE MVQKGTYTEF LKSGVDFGSL LKKENEEAEP SPVPGTPTLR NRTFSEASIW 660
  661 SQQSSRPSLK DGVPDAQDAE NTQAAQPEES RSEGRIGFKA YKNYFSAGAS WFFIIFLVLL 720
  721 NLMGQVFYVL QDWWLSHWAN RQGALNDTKN ANGNVTGTLD LSWYLGIYTG LTAVTVLFGI 780
  781 ARSLLVFYVL VNASQTLHNR MFESILKAPV LFFDRNPIGR ILNRFSKDIG HMDDLLPLTF 840
  841 LDFIQTLLLV VSVIAVAAAV IPWILIPLVP LSIIFVVLRR YFLETSRDVK RLESTTRSPV 900
  901 FSHLSSSLQG LWTIRAYKAE ERCQELFDAH QDLHSEAWFL FLTTSRWFAV RLDAICAVFV 960
  961 IVVAFGSLVL AKTLDAGQVG LALSYSLTLM GMFQWSVRQS AEVENMMISV ERVIEYTDLE1020
 1021 KEAPWECRKR PPPGWPHEGV IVFDNVNFTY SLDGPLVLKH LTALIKSREK VGIVGRTGAG1080
 1081 KSSLISALFR LSEPEGKIWI DKILTTEIGL HDLRKKMSII PQEPVLFTGT MRKNLDPFNE1140
 1141 HSDEELWKAL EEVQLKEAIE DLPGKMDTEL AESGSNFSVG QRQLVCLARA ILKKNRILII1200
 1201 DEATANVDPR TDELIQQKIR EKFAQCTVLT IAHRLNTIID SDKIMVLDSG RLREYDEPYV1260
 1261 LLQNPESLFY KMVQQLGKGE AAALTETAKQ VYFRRNYPDI AFSSPAVMST SNGQPSALTI1320
 1321 FETAL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle