YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AMT3_DICDI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	27	0.84
Transmembrane Helix	28	51	0.72
Cytoplasmic	52	62	0.82
Transmembrane Helix	63	83	0.93
Non-Cytoplasmic	84	103	0.95
Transmembrane Helix	104	125	0.91
Cytoplasmic	126	133	0.80
Transmembrane Helix	134	155	0.92
Non-Cytoplasmic	156	171	0.85
Transmembrane Helix	172	191	0.95
Cytoplasmic	192	206	0.89
Transmembrane Helix	207	227	0.91
Non-Cytoplasmic	228	247	0.84
Transmembrane Helix	248	267	0.92
Cytoplasmic	268	276	0.73
Transmembrane Helix	277	297	0.73
Non-Cytoplasmic	298	300	0.62
Transmembrane Helix	301	324	0.83
Cytoplasmic	325	332	0.69
Transmembrane Helix	333	354	0.92
Non-Cytoplasmic	355	374	0.66
Transmembrane Helix	375	399	0.87
Cytoplasmic	400	431	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQFSTSSSE SSDSSSEYSL EFYMDTSWVL DAANLVFFMQ AGFGMLEAGM VRAKNTKSIL  60
   61 LKNLINTAIC AISYYCVGHS FAYGKVNPNS FVGFGNFFLM DYTHYAYWMI QWAYAATATT 120
  121 IATGAMAERL QLHCYILFTL VQTILIYPFV AHWIWSQNGW LFDLGIVDFA GGAVIHIVAG 180
  181 ITGACGSFLL GPRIGRFNQE SGKPKNLPGH SVVLMSLGAM ILWYSWYGYT AGASLGMTRS 240
  241 RVLPASRVSV VVTLSGATGL ITVLGIGKIF NGHYDLVKGI NGLIAGLVSS TSSCAYIEPW 300
  301 AAIIIGFIGG IVYWFSSWAL LNWLRLDDPV DSTAIHLFGG CWSLISVAFF ATHGRVRNPD 360
  361 IILPGGIFYG GGISLLWVQL VGMVLAILWA GFLSGIFFFT MDYFGKLRVD VDTELAGLDN 420
  421 SNHGGSAYIF D