YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3328182, gi\|1...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.97
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDSVRTTTT ISSTKSLVHS FQLSAILHLF LLISFTPMSA AADQHASHAT RRGLLRKLGL  60
   61 EHVPVQTGPS IDVPQHMWDI YDDDNDVDWV RHYYPKEIIE DNEGFLLSYN LSLAARNAHN 120
  121 EEVTKATLKL RLRRNNKARR SGNISIYFFE DDINNDRFQI ESRSVDNLTE WIDFDVTAAF 180
  181 LRRTNRISFF IDLPEDVETE ETQSSSLSSL PTRGSQSAPL IVFSDLSEPS SVRRKRSRQT 240
  241 GNSERKNRKK GRKHHNTEAE SNLCRRTDFY VDFDDLNWQD WIMAPKGYDA YQCQGSCPNP 300
  301 MPAQLNATNH AIIQSLLHSL RPDEVPPPCC VPTETSPLSI LYMDVDKVIV IREYADMRVE 360
  361 SCGCR

Type	Start	End	Confidence
Signal Peptide	1	42	0.96
N-region	1	33
H-region	34	39
C-region	40	42
Cleavage Site	42	43
Non-Cytoplasmic	43	365	0.99