YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71282360, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSISAHNSKL QRFVESKKFQ SFLIFLILFN AISLGLETSQ FGKANAELLH TIDTTILVLF  60
   61 TIELLLKFIV YRNQFFRSGW NWFDFIIVAI SWAPTSGALS VLRAFRILRV LRLLSVVPQM 120
  121 RRVIGALGHS LPGMASVVGV LSIIFYVSAV LTTKIFGTHS DANMQEWFGN IGASAYTLFQ 180
  181 VMTLESWSMG IVRPTMELFP LSWVFFVPFI IITSFAVLNL FIGIIVDAMQ VMHEEEGKPK 240
  241 QVIATKEDML ILEQKIDKLN QLLQSKSKPD K

Type	Start	End	Confidence
Cytoplasmic	1	20	0.87
Transmembrane Helix	21	41	0.89
Non-Cytoplasmic	42	48	0.84
Transmembrane Helix	49	71	0.61
Cytoplasmic	72	79	0.56
Transmembrane Helix	80	105	0.82
Non-Cytoplasmic	106	125	0.55
Transmembrane Helix	126	153	0.78
Cytoplasmic	154	166	0.48
Transmembrane Helix	167	187	0.78
Non-Cytoplasmic	188	200	0.57
Transmembrane Helix	201	225	0.87
Cytoplasmic	226	271	0.63