YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71282233, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLLVVKAQR QLRKIDNSKV FQGVVIAVIL LSALLIGAKT HNLSSNVVAI LLLMDVAVTV  60
   61 FFAIEISIRY LACPQKKNFF KSGWNIFDTV IVIGSLVPSG GSGVLLARLL RVFRVLRLVS 120
  121 MVPELRLLIN ALLKAIPRMG YIALLMFVIF YIYAAIGSMY FHSINEVLWG DVSISMLTLF 180
  181 RVATFEDWTD VMYETMAVHP LSWIYYLTFI FLTAFIFLNM MVGTVLEVMS QEHEQFRAEQ 240
  241 HGESGDGGEP ASRAQIDKLE SEIAEIKALL LAKT

Type	Start	End	Confidence
Cytoplasmic	1	19	0.93
Transmembrane Helix	20	38	0.97
Non-Cytoplasmic	39	46	0.73
Transmembrane Helix	47	68	0.84
Cytoplasmic	69	83	0.74
Transmembrane Helix	84	107	0.79
Non-Cytoplasmic	108	114	0.56
Transmembrane Helix	115	130	0.41
Cytoplasmic	131	138	0.46
Transmembrane Helix	139	161	0.86
Non-Cytoplasmic	162	202	0.60
Transmembrane Helix	203	226	0.87
Cytoplasmic	227	274	0.82