YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56676695, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRMQAFIDR PGFGRFITAV IMLNAVVLGM ETSPYLMERW GGLILAADRI CLGIFIVEIA  60
   61 LKLTAQRQRF FLNGWNLFDF VIVGIALIPA AGGLSVLRAL RILRVLRVIS VAPRLRRVVE 120
  121 GFITALPGMA SVFLLMTIIF YIGAVIATKL FAASFPDWFG DLGLSAYTLF QIMTLESWSM 180
  181 GIVRPVMQVY PYAWLFFVPF IMITTFAVVN LLVGLIVNSM QDAHHAEDGE RTDAYRDEVL 240
  241 ARLEQIDQRL NALGETKK

Type	Start	End	Confidence
Cytoplasmic	1	11	0.87
Transmembrane Helix	12	33	0.89
Non-Cytoplasmic	34	79	0.73
Transmembrane Helix	80	100	0.92
Cytoplasmic	101	120	0.75
Transmembrane Helix	121	145	0.88
Non-Cytoplasmic	146	162	0.63
Transmembrane Helix	163	182	0.70
Cytoplasmic	183	191	0.55
Transmembrane Helix	192	216	0.88
Non-Cytoplasmic	217	258	0.65