YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4406272, gi\|7...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.97
Transmembrane Helix	16	37	0.94
Non-Cytoplasmic	38	59	0.88
Transmembrane Helix	60	83	0.91
Cytoplasmic	84	101	0.90
Transmembrane Helix	102	123	0.92
Non-Cytoplasmic	124	146	0.86
Transmembrane Helix	147	169	0.90
Cytoplasmic	170	182	0.92
Transmembrane Helix	183	206	0.90
Non-Cytoplasmic	207	242	0.86
Transmembrane Helix	243	260	0.94
Cytoplasmic	261	270	0.75
Transmembrane Helix	271	292	0.91
Non-Cytoplasmic	293	302	0.91
Transmembrane Helix	303	327	0.84
Cytoplasmic	328	337	0.88
Transmembrane Helix	338	359	0.94
Non-Cytoplasmic	360	376	0.87
Transmembrane Helix	377	399	0.91
Cytoplasmic	400	411	0.81
Transmembrane Helix	412	431	0.92
Non-Cytoplasmic	432	451	0.85
Transmembrane Helix	452	473	0.92
Cytoplasmic	474	518	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAINRWLFST NHKDIGTLYL IFGAWAGMVG TGLSLLIRAE LSQPGSLLGD DQIYNVLVTA  60
   61 HALVMIFFMV MPIMIGGFGN WLVPLMIGSP DMAFPRMNNM SFWLLPPSFL LLLASAGVEA 120
  121 GAGTGWTVYP PLAGNLAHAG ASVDLTIFSL HLAGISSILA SINFITTIIN MKPPAISQYQ 180
  181 TPLFVWSILV TTVLLLMALP VLAAGITMLL TDRNLNTTFF DPAGGGDPIL YQHLFWFFGH 240
  241 PEVYILILPG FGMISHVVAY YSGKKEPFGY MGMVWAMMAI GLLGFIVWAH HMFTVGMDVD 300
  301 TRAYFTSATM IIAIPTGVKV FSWLATLHGG SIKWETPLLW ALGFIFLFTV GGLTGVVLAN 360
  361 SSLDIVLHDT YYVVAHFHYV LSMGAVFAIM AGFVHWFPLF TGYTLHSTWS KIQFLIMFIG 420
  421 VNLTFFPQHF LGLAGMPRRY SDYPDAYTLW NVVSSIGSLI SLVAVIILLF IIWEAFASKR 480
  481 EVLSIELSNT NVEWLHGCPP PYHTYEEPAF VQVQQPAY