YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4099923
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKRATRSVS GGLDKEPRLP TSQKQKTLLS ADVGHFSLVR ALHMADLITL MNGFCGVMSV  60
   61 FSSLRYCLGA PDNHSNVWLA LYFLPFGLFF DFFDGKVARW RNKSSLMGQE LDSLADLISF 120
  121 GVAPAMVAFS IGLRTFADTV GLTFFVLCGL TRLARFNVTV AVLPKDATGK SKYFEGTPIP 180
  181 TSLVLDGVMA YWVYNGLILD NVPFGVLAEG TMLEVHPAVL LFMIHGCLMT SKTIRIPKP

Type	Start	End	Confidence
Cytoplasmic	1	46	0.95
Transmembrane Helix	47	68	0.88
Non-Cytoplasmic	69	76	0.80
Transmembrane Helix	77	95	0.92
Cytoplasmic	96	113	0.87
Transmembrane Helix	114	133	0.91
Non-Cytoplasmic	134	139	0.65
Transmembrane Helix	140	159	0.74
Cytoplasmic	160	175	0.68
Transmembrane Helix	176	194	0.76
Non-Cytoplasmic	195	211	0.77
Transmembrane Helix	212	231	0.83
Cytoplasmic	232	239	0.77