YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4337178, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPNNQIQAP VENYANPRTC LFHVLFKGAA LAFYILSALF FNSFVIIFVV TVLLAALDFW  60
   61 VVKNVSGRIL VGLRWWNEIN DLGESVWKFE SLDQESLARM NKKDSWLFWW TLYLAAAAWF 120
  121 ILGVFSLIRF QADYLLVVGV CLSLNVANII GFTKCKKDNR ITVPINSTIC LHPCLKRRKT 180
  181 LFLRAVRAKT VYKEDCQNDM VGFLTDWFQM FCDASFCFGE LLINTKLRGD LLMQSRDHVD 240
  241 DVVS

Type	Start	End	Confidence
Cytoplasmic	1	18	0.59
Transmembrane Helix	19	40	0.64
Non-Cytoplasmic	41	43	0.46
Transmembrane Helix	44	62	0.88
Cytoplasmic	63	105	0.94
Transmembrane Helix	106	128	0.91
Non-Cytoplasmic	129	133	0.78
Transmembrane Helix	134	152	0.91
Cytoplasmic	153	244	0.93