YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45829841
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GARSAGVKAG SRPSPVLQQS ASSFNMTDAA VSFAKDFLAG GVAAAISKTA VAPIERVKLL  60
   61 LQVQHASKQI TADKQYKGII DCVVRIPKEQ GVLSFWRGNL ANVIRYFPTQ ALNFAFKDKY 120
  121 KQIFLGGVDK RTQFWLYFAG NLASGGAAGA TSLCFVYPLD FARTRLAADV GKAGAEREFR 180
  181 GLGDCLVKIY KSDGIKGLYQ GFNVSVQGII IYRAAYFGIY DTAKGMLPDP KNTHIVISWM 240
  241 IAQTVTAVAG LTSYPFDTVR RRMMMQSGRK GTDIMYTGTL DCWRKIARDE GGKAFFKGAW 300
  301 SNVLRGMGGA FVLVLYDEIK KYT

Type	Start	End	Confidence
Cytoplasmic	1	133	0.68
Transmembrane Helix	134	157	0.74
Non-Cytoplasmic	158	234	0.68
Transmembrane Helix	235	256	0.87
Cytoplasmic	257	323	0.80