YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4336952
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LVCWAVWINS NLQNVTNFFV VSLAAADIAV GVLAIPFAIT ISTGFCAACH GCLFFACFVL  60
   61 VLTQSSIFSL LAIAIDRYIA IRIPLRYNGL VTGVRAKGII AICWVLSFAI GLTPMLGWNN 120
  121 CSQKDGNSTK TCG

Type	Start	End	Confidence
Cytoplasmic	1	17	0.76
Transmembrane Helix	18	39	0.91
Non-Cytoplasmic	40	50	0.54
Transmembrane Helix	51	75	0.87
Cytoplasmic	76	92	0.75
Transmembrane Helix	93	118	0.79
Non-Cytoplasmic	119	133	0.83