YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4336205
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFLQEQSVE TTVAVAVAVA AVAAGGAFLL LRSRKPKGCL DPENFRKFKL VEKKQISHNV  60
   61 ARFKFALPTP TSVLGLPIGQ HISCRGQDAT GEEVIKPYTP TTLDSDLGYF ELVIKMYPQG 120
  121 RMSHHFREMK VGDYLSVKGP KGRFKYHVGQ VRAFGMLAGG SGITPMFQVA RAILENPNDN 180
  181 TKVHLIYANV TYEDILLKDE LDDMAKTYPG RFKIYYVLNQ PPENWNGGVG FVSKEMIQSH 240
  241 CPAPAEDIQI LRCGPPPMNK AMAAHLDELN YTKEMQFQF

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.67
Transmembrane Helix	12	31	0.84
Cytoplasmic	32	150	0.70
Transmembrane Helix	151	167	0.38
Non-Cytoplasmic	168	279	0.67