YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3211979
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TAPLTPTSRE QILAKIRDWG SGSDTLRCLA LATRDAPPRK EDMELDDCSK FVQYETDLTF  60
   61 VGCVGMLDPP RPEVAACITR CYQAGIRVVM ITGDNKGTAV AICRRLGIFG DTEDVAGKAY 120
  121 TGREFDDLSP EQQRQACRTA RCFARVEPAH KSRIVENLQS FNEITAMTGD GVNDAPALKK 180
  181 AEIGIAMGSG TAVAKSAAEM VLSDDNFASI VAAVEEGRAI YSNMKQFIRY LISSNVGEVV 240
  241 CIFLTAILGL PEALIPVQLL WVNLVTDGLP ATALGFNPPD LDIMEKLPRS PREALISGWL 300
  301 FFRYLAIGVY VGLATVAAAT WWFVYDAEGP HINFYQLRNF LKCSEDNPLF AGIDCEVFES 360
  361 RFPTTMALSV LVTIEMCNAL NSVSENQSLL RMPPWMNPWL LVAVAMSMAL HFLILLVPPL 420
  421 PLIFQVTPLS GRQWVVVLQI SLPVILLDEA LKYLSRNHMH ACLYPGLLRT VSQAWSRQPL 480
  481 TTSWTPDHTG LASLKK

Type	Start	End	Confidence
Cytoplasmic	1	226	0.95
Transmembrane Helix	227	250	0.81
Non-Cytoplasmic	251	258	0.66
Transmembrane Helix	259	279	0.64
Cytoplasmic	280	299	0.71
Transmembrane Helix	300	324	0.89
Non-Cytoplasmic	325	363	0.73
Transmembrane Helix	364	380	0.48
Cytoplasmic	381	397	0.61
Transmembrane Helix	398	420	0.87
Non-Cytoplasmic	421	433	0.58
Transmembrane Helix	434	451	0.44
Cytoplasmic	452	496	0.64