YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4164029, gi\|7...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.89
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	29	0.85
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	787	0.99
Transmembrane Helix	788	810	0.94
Cytoplasmic	811	819	0.87
Transmembrane Helix	820	839	0.90
Non-Cytoplasmic	840	849	0.71
Transmembrane Helix	850	869	0.86
Cytoplasmic	870	889	0.76
Transmembrane Helix	890	909	0.94
Non-Cytoplasmic	910	928	0.90
Transmembrane Helix	929	952	0.92
Cytoplasmic	953	972	0.92
Transmembrane Helix	973	993	0.96
Non-Cytoplasmic	994	1000	0.79
Transmembrane Helix	1001	1025	0.88
Cytoplasmic	1026	1354	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSSGCRMRS LWFIIIISFL PNTEGFSRAA LPFGLVRREL SCEGYSIDLR CPGSDVIMIE  60
   61 SANYGRTDDK ICDADPFQME NTDCYLPDAF KIMTQRCNNR TQCIVVTGSD VFPDPCPGTY 120
  121 KYLEVQYECV PYMEQKVFVC PGTLKAIVDS PCIYEAEQKA GAWCKDPLQA ADKIYFMPWT 180
  181 PYRTDTLIEY ASLEDFQNSR QTTTYKLPNR VDGTGFVVYD GAVFFNKERT RNIVKYDLRT 240
  241 RIKSGEAIIN YANYHDTSPY RWGGKTDIDL AVDENGLWVI YATEQNNGMI VISQLNPYTL 300
  301 RFEATWETVY DKRAASNAFM ICGVLYVVRS VYQDNESETG KNAIDYIYNT RLNRGEYVDV 360
  361 PFPNQYQYIA AVDYNPRDNQ LYVWNNNFIL RYSLEFGPPD PAQERFCEAL DARGIRWPQT 420
  421 QRGMMVERPC PKGTRGTASY LCVLSTGTWN PKGPDLSNCT SHWVNQLAQK IRSGENAASL 480
  481 ANELAKHTKG PVFAGDVSSS VRLMEQLVDI LDAQLQELKP SEKDSAGRSY NKLQKREKTC 540
  541 RAYLKAIVDT VDNLLRPEAL ESWKHMNSSE QAHTATMLLD TLEEGAFVLA DNLVEPTRVS 600
  601 MPTENIVLEV AVLSTEGQVQ DFKFPLGIKG AGSSIQLSAN TVKQNSRNGL AKLVFIIYRS 660
  661 LGQFLSTENA TIKLGADFIG RNSTIAVNSH VISVSINKES SRVYLTDPVL FTLPHIDPDN 720
  721 YFNANCSFWN YSERTMMGYW STQGCKLVDT NKTRTTCACS HLTNFAILMA HREIAYKDGV 780
  781 HELLLTVITW VGIVISLVCL AICIFTFCFF RGLQSDRNTI HKNLCINLFI AEFIFLIGID 840
  841 KTKYMIACPI FAGLLHFFFL AAFAWMCLEG VQLYLMLVEV FESEYSRKKY YYVAGYLFPA 900
  901 TVVGVSAAID YKSYGTEKAC WLHVDNYFIW SFIGPVTFII LLNIIFLVIT LCKMVKHSNT 960
  961 LKPDSSRLEN IKSWVLGAFA LLCLLGLTWS FGLLFINEET IVMAYLFTIF NAFQGVFIFI1020
 1021 FHCALQKKVR KEYGKCFRHS YCCGGLPTES PHSSVKASTT RTSARYSSGT QSRIRRMWND1080
 1081 TVRKQSESSF ISGDINSTST LNQGHSLNNA RDTSAMDTLP LNGNFNNSYS LRKGDYNDSV1140
 1141 QVVDCGLSLN DTAFEKMIIS ELVHNNLRGS SKAHNLELTL PVKPVIGGSS SEDDAIVADA1200
 1201 SSLMHGDNPG LELHHKELEA PLIPQRTHSL LYQPQKKAKP EGTDSYVSQL TAEAEDHLQS1260
 1261 PNRDSLYTSM PNLRDSPYQE SSPDMEEDLS PSRRSENEDI YYKSMPNLGA GHQLQMCYQI1320
 1321 SRGNSDGYII PINKEGCIPE GDVREGQMQL VTSL