YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FBpp0306026, CG1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	253	0.93
Transmembrane Helix	254	275	0.89
Non-Cytoplasmic	276	286	0.79
Transmembrane Helix	287	310	0.84
Cytoplasmic	311	318	0.72
Transmembrane Helix	319	337	0.92
Non-Cytoplasmic	338	341	0.76
Transmembrane Helix	342	364	0.91
Cytoplasmic	365	374	0.87
Transmembrane Helix	375	397	0.90
Non-Cytoplasmic	398	404	0.83
Transmembrane Helix	405	425	0.95
Cytoplasmic	426	460	0.92
Transmembrane Helix	461	477	0.81
Non-Cytoplasmic	478	494	0.72
Transmembrane Helix	495	517	0.86
Cytoplasmic	518	527	0.61
Transmembrane Helix	528	546	0.85
Non-Cytoplasmic	547	552	0.80
Transmembrane Helix	553	577	0.87
Cytoplasmic	578	588	0.87
Transmembrane Helix	589	611	0.85
Non-Cytoplasmic	612	644	0.90
Transmembrane Helix	645	663	0.96
Cytoplasmic	664	705	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSGRSYGQR QSDTLESSFE LEDSEAEQVN SPVAIKGEPS AHGDTDRDGD ADRERQESGE  60
   61 QTDSLSTRSS SSTPTTADVA DVETISSLPL SPPAFGGRGN QLVKRHSPLK DKQAEQADSS 120
  121 SSSSCSQQPD ADDVPTVSGC DLRQSPPSSS SSSSSTSTSP QTSRYAAAAA HPSAAFAETA 180
  181 ITASSGSGRV CGGSGGAAHR RTHSAASYIS MRSQGGNSEA TPERPKRNRF FEWIRVVCNI 240
  241 CCCKSSGIGE PSVHHALVVI FLEFFAWGLL TMPIISTLNQ TFPDHTFLMN GLVMGIKGIL 300
  301 SFLSAPLIGA LSDIWGRKFF LLVTVFFTCL PIPLMSINTW WFFAMISISG AFAVTFSVVF 360
  361 AYVADVTTPE ERSKAYGLAS ATFAASLVIS PALGNALMEM YGDTLVVALS TAIALLDVFF 420
  421 ILVAVPESLS EKMRPASWGA PISWEQADPF LALRKVGTDK TVLMLCLTVL LSYLPEAGEY 480
  481 SCMFVYLKLK MGFNYVEVSV FIAIVGILSI TVQVTLGSFM QVFGAKRTII MGLALEIVQL 540
  541 LWYGFGSQKW MMWSAGVVAA LGSITYPAIS AFVSLYAAPE SQGAVQGMIT GMRGLCNGLG 600
  601 PAVFGVVFYL FNVDLNDDHD SHAKSSGSRA TNVEKISQHV PGPPFVFGAL CVFCAIIVSA 660
  661 FIPEGQTSTL EKKRASLDVQ YEIEPGHKAP SSLAPLIRSD SLAQL