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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: Pkd2-PA
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.55
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQQGQSGRS PSGPPGPPPP RPPKTPPGAS PRGTPTADST PGDVTPARGP PPPPATKRVS  60
   61 IGVGSTRSAP PPATDPTGPP PTAGKPVRDT GPSTSPRPSL RDPGQSTSDK PSTSDKPSTS 120
  121 DKPSTSARTT VREPGPSSSP SRPVSTRESG RITFQEAAPS TSAKVVKLAA SEPRPAKPPE 180
  181 KEGFSLFKRK KKSVGSSTPP SPSRGHRAPS IIAASALQNR AKTNRILYTT DEEVREALVE 240
  241 FSVFIIFLIL TSLVVLSVRH TYMFYFNDTM KKLFTNREMV VAPSVTVGFE KLITVPDWWD 300
  301 YLKYNFLVTL HGDLTFMDDA QANLTSMPPE GSEQGSEQGS EQGSEQSPEE VVGEAPEEAP 360
  361 EMDRLQEDFK YNGNPYIDLR GHRRAKRQSG VDGNSEDGSE DVSGNYLKDD SDSIQANMSF 420
  421 HHLEGRVFLY ENLLLGPPRL RQIRVRKESC YVNDAFIRYF NTCYAAYSSG AEDRKPMHKG 480
  481 SPFRTMHDLD STPIWTVLAF YRTGGYTVNL DYDKDRNVKI INDLKDIHWL DRGSRLCLVE 540
  541 FNLFNENTDI FQSIKLIAEI PPTGGVIPQA HLQTVKMYSF FTDRSMLMTV IYIFWYIMVI 600
  601 YYTIYEITEI RKSGIKIYFC SMLNILDCAI LLGCYLALVY NIWHSFKVMS LTARAHSDVT 660
  661 YQSLDVLCFW NIIYVDMMAI LAFLVWIKIF KFISFNKTLV QFTTTLKRCS KDLAGFSLMF 720
  721 GIVFLAYAQL GLLLFGTKHP DFRNFITSIL TMIRMILGDF QYNLIEQANR VLGPIYFLTY 780
  781 ILLVFFILLN MFLAIIMETY NTVKGEITQG RSHLGSYIYR KLSGMLYWIT HCGRKRRHHP 840
  841 QASETEDKDA EHDVGAAHDE THEIRKNMTP AEQQYFKDIP QGENQDMVRL NNRVGLLEEI 900
  901 LEKLINNMDD ILKRVEKDYH NKKK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle