YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34013886
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEELTQNPS LTQSLSQREG RKIHISQREG RKFPFQYLSE REERKLSFLN MFSFLMPLLE  60
   61 VIKIIIASVA SVVFLGFAGV TLAGSAVALA VSTPLFIIFS PVLVPATIAT VVLTTGFTAG 120
  121 GSFGATALGL IVWLIKRRMG VPPKDNPPPK ELPPNAGGGG ASAQTLLEKP KSKGGFKLPD 180
  181 WFKKIPGLGG IFGGGKGRFS PGGEGLFGGR GGKLKEKARK CKGRKGKSKS KGGMSGGGGG 240
  241 MSEGEGGMSS GGEGMSGSGG AKSKGEGGMS GSEGGMSGGG MSGGGMSGSE GGVSGSEGCK 300
  301 HGGGGGKHGG GGGKHEGKHG CKHGGGGGKH GGRGSDVEEE

Type	Start	End	Confidence
Cytoplasmic	1	63	0.77
Transmembrane Helix	64	98	0.74
Non-Cytoplasmic	99	107	0.48
Transmembrane Helix	108	134	0.86
Cytoplasmic	135	340	0.73