YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	UTR5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEPDSVNEA KEKKKKLWKA VFAISGIMLT LVIYGLLQEK IMRVPYGLKK EYFKHSLFLV  60
   61 FCNRLTTSAV SAAALLASKK VLDPVAPVYK YCLISVTNIL TTTCQYEALK YVSFPVQTLA 120
  121 KCAKMIPVMV WGTLIMQKKY RGFDYLVAFL VTLGCSVFIL FPAGDDISPY NKGRENTVWG 180
  181 VSLMVGYLGF DGFTSTFQDK LFKGYNMEIH NQIFYTTICS SILSFTGLIL QGHLLPAVDF 240
  241 VSRHRDCLFD IALLSTVATA SQFFISYTIR TFGALTFAAI MTTRQLASIM LSCIWFSHPL 300
  301 SWEQCIGSVI VFGSLYAKTF VKKKSEKPPA AQELPRDEEA QPLKGNP

Type	Start	End	Confidence
Cytoplasmic	1	16	0.94
Transmembrane Helix	17	37	0.92
Non-Cytoplasmic	38	56	0.85
Transmembrane Helix	57	77	0.70
Cytoplasmic	78	141	0.66
Transmembrane Helix	142	163	0.91
Non-Cytoplasmic	164	176	0.79
Transmembrane Helix	177	197	0.71
Cytoplasmic	198	212	0.58
Transmembrane Helix	213	235	0.90
Non-Cytoplasmic	236	246	0.61
Transmembrane Helix	247	269	0.70
Cytoplasmic	270	271	0.37
Transmembrane Helix	272	296	0.59
Non-Cytoplasmic	297	299	0.40
Transmembrane Helix	300	320	0.49
Cytoplasmic	321	347	0.77