YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	UD2A2_MOUSE
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.92
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKKVLQLLI FHLTLAEIVL SGNVVVWPTD GSHWLNIKIL LEELVQRNHS VTVLAPSETL  60
   61 FINSRLDAFI NFEEIPVSYT KSKIDEIIEH MIALWLDHRP TPLTMWTFYK ELGNLLATFY 120
  121 TTNKQMCDGV LNNPTVMERL QKGGFDVLLA DPVTMCGELV ALKLGIPFVY TLRFSPAFTV 180
  181 ERHCGKIPAP ISYVPAALSE LTDQMSFGER VKNIISYSLQ DYIFKTYWGE WNSYYSKVLG 240
  241 RPTTLCETMG KAEIWLMRTY WDFEFPRPYL PNFEFVGGLH CKPAKPLPKE MEEFVQTSGE 300
  301 HGIVVFSLGS MVKNLTDEKA NLIASALAQI PQKVLWRYKG KIPDTLGSNT RLFDWIPQND 360
  361 LLGHPKTRAF ITHGGTNGIY EAIYHGIPMV GVPMFADQPD NIAHMKAKGA AVEVNMNTMT 420
  421 SSDLLNALRT VINEPSYKEN AMRLSRIHHD QPVKPLDRAV FWIEFVMRHK GAKHLRVAAH 480
  481 DLSWFQYHSL DVIGFLLACV ASAILLVAKC CLFIFQKVGK TGKKKKRD

Type	Start	End	Confidence
Signal Peptide	1	21	0.85
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	491	0.99
Transmembrane Helix	492	515	0.91
Cytoplasmic	516	528	0.96