YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|212254, gi\|104757
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRAARAVLL GFLQASSSFD VRDSTGKVCI IANLTVAFSV EYKSSGQKQF AHFFLPQNAT  60
   61 SQSHSSCGEG NTSHPILALS FGAGHLISLN FSKTLDKYQV EELTFHYNLS DETLFPNATE 120
  121 GKVMVATQKS VIQARIGTEY RCINSKYIRM KHVNITFSNV TLEAYPTNDT FSANKTECRE 180
  181 DMVSTTTVAP TTPKHATSQV PTTSPAPTAA PSSPAVGKYN VTGANGTCVL ASMGLQLNIT 240
  241 YVKKDEKMGL DLLNFIPHNT SASGMCESTS AFLNLAFEKT KITFHFVLNA SSEKFFLQGV 300
  301 NVSTTLPSEA KAPTFEASND SMSELRATVG NSYKCSAEEN FQVTDKALVN VFNVQVQAFK 360
  361 VDGDKFGAVE ECQLDENNML IPIIVGAALA GLVLIVLIAY LIGRKRSHAG YQTI

Type	Start	End	Confidence
Signal Peptide	1	18	0.96
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	379	0.99
Transmembrane Helix	380	402	0.93
Cytoplasmic	403	414	0.95