YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4191496
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.84
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLGFVFILL SYARNCLGVK LLEANPDVKR LYDDLLSNYN RLIRPVTNVS DILTVRLGLK  60
   61 LSQLMEVNLK NQVMTTNLWV EQKWFDYKLQ WNPDDYGGVE MLYVPSEHIW LPDIVLYNNW 120
  121 DGNYEVTLMT KATLKYTGEV NWKPPAIYKS SCEINVEYFP FDEQTCFMKF GSWTYNGAQV 180
  181 DLKHMDQSPG SSLVHVGIDL SEFYLSVEWD ILEVPATRNE EYYPCCPEPF SDITFKLTMR 240
  241 RKTLFYTVNL IIPCVGLTFL TVLVFYLPSD SGEKISLCIS ILVSLTVFFL GLAEIIPPTS 300
  301 LAIPLLGKYL LFTMILVSLS VWVTVCILNV HFRSPSTHTM SPWMKKLFLQ LMPKLLMMRR 360
  361 TKYSLPDYDD TFVSNGYTNE LEMSRDSLTD AFGDKDNGDY RKSPAPEDDM LSAGGAHQRP 420
  421 SVTESENMLP RHLSPEVAAA LKSVRFIAQH IKDADKDNEV VEDWKFMSMV LDRFFLWLFT 480
  481 IACFVGTFGI IFQSPSLYDT RVPVDQQISS IPMKKNNFFY PKDIETIGII S

Type	Start	End	Confidence
Signal Peptide	1	18	0.82
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	244	0.97
Transmembrane Helix	245	267	0.94
Cytoplasmic	268	274	0.90
Transmembrane Helix	275	296	0.91
Non-Cytoplasmic	297	308	0.78
Transmembrane Helix	309	332	0.89
Cytoplasmic	333	473	0.98
Transmembrane Helix	474	492	0.97
Non-Cytoplasmic	493	531	0.95