YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4185264
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	24	0.76
Transmembrane Helix	25	45	0.92
Non-Cytoplasmic	46	61	0.75
Transmembrane Helix	62	83	0.60
Cytoplasmic	84	103	0.50
Transmembrane Helix	104	124	0.83
Non-Cytoplasmic	125	165	0.61
Transmembrane Helix	166	189	0.88
Cytoplasmic	190	201	0.88
Transmembrane Helix	202	222	0.91
Non-Cytoplasmic	223	231	0.79
Transmembrane Helix	232	255	0.93
Cytoplasmic	256	516	0.99
Transmembrane Helix	517	536	0.79
Non-Cytoplasmic	537	562	0.80
Transmembrane Helix	563	584	0.91
Cytoplasmic	585	603	0.74
Transmembrane Helix	604	626	0.57
Non-Cytoplasmic	627	653	0.44
Transmembrane Helix	654	680	0.83
Cytoplasmic	681	681	0.45

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFTGATLTT STIAATAASG PLMDYLWMLI LGFIIAFVLA FSVGANDVAN SFGTAVGSGV  60
   61 VTLKQACILA SIFETVGSVL LGAKVSETIR KGLIDVEMYN TTQQLLMAGS VSAMFGSAVW 120
  121 QLVASFLKLP ISGTHCIVGA TIGFSLVAKG QEGVKWSELI KIVMSWFISP LLSGIMSGIL 180
  181 FFLVRAFILR KTDPVPNGLR ALPVFYACTV GINLFSIMYT GAPLLGFDKL PLWGTILISV 240
  241 GCAVFCALIV WFFVCPRMKR KIEREIKSSP SESPLMEKKN SLKEDHEETK LSVSDIETRS 300
  301 PVSEVGSATV PLRAVVEERT VSFKLGDLEE APERERLPSV DLKEETSIDS AMNGAVQLPN 360
  361 GNLVQFNQAV SNQMNSSGHY QYHTVHKDSG LYKELLHKLH LAKVGDCMGD SXDKPLRRNN 420
  421 SYTSYTMAIC GMPLDSFRAK EGEQKGEEME KLTWPNAESK KRIRMDSYTS YCNAVSDIHS 480
  481 ASEMDMSVKA EMGLGDRKGS SSSLEEWYDQ DKPEVSLLFQ FLQILTACFG SFAHGGNDVS 540
  541 NAIGPLVALY LVYDTGDVSS KVATPIWLLL YGGVGICIGL WVWGRRVIQT MGKDLTPITP 600
  601 SSGFSIELAS ALTVVIASNI GLPISTTHCK VGSVVSVGWL RSKKAVDWRL FRNIFMAWFV 660
  661 TVPISGVISA AIMAVFKYVI L