YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4151321
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITAADFYHV MTAMVPLYVA MILAYGSVKW WKIFTPDQCS GINRFVALFA VPLLSFHFIA  60
   61 ANNPYAMNLR FLAADSLQKV IVLSLLFLWC KLSRNGSLDW TITLFSLSTL PNTLVMGIPL 120
  121 LKGMYGNFSG DLMVQIVVLQ CIIWYTLMLF LFEYRGAKLL ISKQFPDTAG SIVSIHVDSD 180
  181 IMSLDGRQPL ETEAEIKEDG KLHVTVRRSN ASRSDIYSRR SQGLSATPRP SNLTNAEIYS 240
  241 LQSSRNPTPR GSSFNHTDFY SMMASGGGRN SNFGPGEAVF GSKGPTPRPS NYEEDGGPAK 300
  301 PTAAGTAAGA GRFHYQSGGS GGGGGAHYPA PNPGMFSPNT GGGGGTAAKG NAPVVGGKRQ 360
  361 DGNGRDLHMF VWSSSASPVS DVFGGGGGNH HADYSTATND HQKDVKISVP QGNSNGIVPL 420
  421

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.92
Transmembrane Helix	7	28	0.88
Cytoplasmic	29	40	0.78
Transmembrane Helix	41	61	0.93
Non-Cytoplasmic	62	70	0.81
Transmembrane Helix	71	90	0.88
Cytoplasmic	91	99	0.79
Transmembrane Helix	100	121	0.90
Non-Cytoplasmic	122	131	0.81
Transmembrane Helix	132	152	0.92
Cytoplasmic	153	420	0.93