YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4138983
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMYYLNMLL FTFLINTLLL PHYENYLNND YNVSFIQNNT KRTTIKSRLL AQTQIHNPHY  60
   61 HNDPELKEII DKMNEEAIKK YQQTHDPYEQ LKEVVEKNGT KYSGGNDAEP ISTLEKELLE 120
  121 TYEEIFGNES DMLKSGMSPN VDEKSSTFEC TDINGVKLAK TKGRDKYLKH LKGRCTRGIY 180
  181 FCSLGSVILT YIGTTAAKGA AISTAGAGSK NCIYAISIFH MLNHKSMSSA LTALGTVGCA 240
  241 ADYASGATSA SAIFLPCGIA ALVLLILTVL LIILYIWLYR RRKRSWKHEC KKHLCK

Type	Start	End	Confidence
Cytoplasmic	1	175	0.92
Transmembrane Helix	176	195	0.77
Non-Cytoplasmic	196	199	0.58
Transmembrane Helix	200	222	0.56
Cytoplasmic	223	229	0.57
Transmembrane Helix	230	247	0.72
Non-Cytoplasmic	248	256	0.58
Transmembrane Helix	257	279	0.92
Cytoplasmic	280	296	0.99