YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4138853
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMESCDCIDT QYPPDELLVK YQYISDVLIA LAYFSIPVEL IYFVQKSAFF PYRWVLMQFG  60
   61 AFIVLCGATH FINLWTFSPH SKAVAVVMTI AKVSCAIVSC ATALMLVHII PDLLSVKTRE 120
  121 LFLKNKAEEL DREMGLILTQ EETGRHVRML THEIRSTLDR HTILKTTLVE LGRTLGLEEC 180
  181 ALWMPSRNGL NLQLSHTLTY HVQVGSTVQT NNPIVNEVFN SPRAMRIPPT CPLARIRPLV 240
  241 GRYVPPEVVA VRVPLLNLSN FQINDWPDIS AKNYAIMVLI LPTDSVRRWR DHELELVDVV 300
  301 ADQVAVALSH AAILEESMRA RDQLMEQNVA LDLARREAEM AIHARNDFLA VMNHEMRTPM 360
  361 HAIIALSSLL LETELTPEQR VMIETVLKSS NVLATLINDV LDLSRLEDGS LELEMGKFNL 420
  421 HGVLGEIVEL IKPIASVKKL PITLILAPDL PTHAIGDEKR LTQTLLNVVG NAVKFTKEGY 480
  481 VSIRASVAKP ESLQDWRPPE FYPTSSDGHF YIRVQVKDSG CGIPPQDIPH LFTKFAQSRS 540
  541 GPARPSSGAG LGLAICKRFV NLMGGHIWIE SEGPGKGSTA TFIVKLGICG NPDPSDHQAT 600
  601 TRSQAYSGSG GLARFKPFIK DEDDSGFSTR RNQRSF

Type	Start	End	Confidence
Cytoplasmic	1	22	0.82
Transmembrane Helix	23	44	0.77
Non-Cytoplasmic	45	53	0.76
Transmembrane Helix	54	77	0.87
Cytoplasmic	78	87	0.77
Transmembrane Helix	88	110	0.89
Non-Cytoplasmic	111	636	0.93