YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4092050
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASAGNAAGA LGRQAGGGRR RRTGGPHRAA PDRDYLHRPS YCDAAFAMEQ ISKGKATGRK  60
   61 APLWLRAKFQ RLLFKLGCYI QKDCGKFLVV GLLIFGAFAV GLKAANLETN VEELWVEVGG 120
  121 RVSRELNYTR QKIGEEAMFN PQLMIQTPKE EGANVLTTEA LLQHLDSALQ ASRVHVYMYN 180
  181 RQWKLEHLCY KSGELITETG YMDQIIEYLY PCLIITPLDC FWEGAKLQSG TAYLLGKPPL 240
  241 RWTNFDPLEF LEELKKINYQ VDSWEEMLNK AEVGHGYMDR PCLNPADPDC PATAPNKNST 300
  301 KPLDVALVLN GGCQGLSRKY MHWQEELIVG GTVKNATGKL VSAHALQTMF QLMTPKQMYE 360
  361 HFRGYDYVSH INWNEDRAAA ILEAWQRTYV EVVHQSVAPN STQKVLSFTT RTLDDILKSF 420
  421 SDVSVIRVAS GYLLMLAYAC LTMLRWDCSK SQGAVGLAGV LLVALSVAAG LGLCSLIGIS 480
  481 FNAATTQVLP FLALGVGVDD VFLLAHAFSE TGQNKRIPIE DRTGECLKRT GASVALTSIS 540
  541 NVTAFFMAAL IPIPALRAFS LQAAVVVVFN FAMVLLIFPA ILSMDLYRRE DRRLDIFCCF 600
  601 TSPCVSLV

Type	Start	End	Confidence
Non-Cytoplasmic	1	427	0.89
Transmembrane Helix	428	446	0.92
Cytoplasmic	447	454	0.85
Transmembrane Helix	455	479	0.90
Non-Cytoplasmic	480	487	0.77
Transmembrane Helix	488	509	0.92
Cytoplasmic	510	529	0.95
Transmembrane Helix	530	553	0.88
Non-Cytoplasmic	554	560	0.76
Transmembrane Helix	561	583	0.91
Cytoplasmic	584	608	0.96