YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4091891
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	28	0.99
Transmembrane Helix	29	50	0.88
Non-Cytoplasmic	51	68	0.86
Transmembrane Helix	69	90	0.94
Cytoplasmic	91	103	0.90
Transmembrane Helix	104	123	0.96
Non-Cytoplasmic	124	140	0.80
Transmembrane Helix	141	161	0.84
Cytoplasmic	162	182	0.91
Transmembrane Helix	183	202	0.93
Non-Cytoplasmic	203	223	0.88
Transmembrane Helix	224	246	0.87
Cytoplasmic	247	282	0.97
Transmembrane Helix	283	303	0.92
Non-Cytoplasmic	304	328	0.95
Transmembrane Helix	329	352	0.85
Cytoplasmic	353	359	0.86
Transmembrane Helix	360	383	0.88
Non-Cytoplasmic	384	403	0.92
Transmembrane Helix	404	428	0.85
Cytoplasmic	429	439	0.74
Transmembrane Helix	440	462	0.85
Non-Cytoplasmic	463	472	0.83
Transmembrane Helix	473	494	0.94
Cytoplasmic	495	512	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENGTKELNK QPPPSAAMQV QTSPPKLPIA TWKLILVAAI AAGVQFGWAL QLSLLTPYVQ  60
   61 LLGIPHKWAA YIWLCGPISG MLVQPIVGYY SDRCQSSFGR RRPFIASGAG CVAISVILIG 120
  121 FAADIGYKAG DDMNKTLKPR AVTVFVIGFW ILDVANNMLQ GPCRALLADL CNGDTRRMRS 180
  181 ANALYRFFMA VGNILGNAAG SYNNLYKLFP FSKTHACDLY CANLKSCFII SIVLLIFITV 240
  241 LALTVVREKQ WSPDEADEEP PSSGKIPVFG ELLRALKDLP RPMLMLLAVT CLNWIAWFPF 300
  301 ILFDTDWMGR EIYGGTAGQG KLYDQGVRVG SLGLLLNSVV LGLTSIAVEY LVRGVGGVKI 360
  361 LWGLVNFLLA IGLVMTVVVS KVAQHQRQHG ANGQLLPPSA GVKAGALSLF SILGIPLSIT 420
  421 FSIPFALASI YSSGSGAGQG LSLGVLNLAI VVPQMIVSVL AGPFDSLFGG GNLPAFVVGA 480
  481 ISAAISGVLA IVLLPKPCKD AAAKLTLSGP YH