YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	APOA1_MESAU
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTVVLAVAV LFLTGSQARH FWQRDDPQTP WDRVKDFATV YVDAVKDSGR EYVSQFETSA  60
   61 LGKQLNLNLL ENWDTLGSTV GRLQEQLGPV TQEFWDNLEK ETEWLRREMN KDLEEVKAKV 120
  121 QPYLDQFQTK WQEEVALYRQ KMEPLGAELR DGARQKLQEL QEKLTPLGED LRDRMRHHVD 180
  181 ALRTKMTPYS DQMRDRLAER LAQLKDSPTL AEYHTKAADH LKAFGEKAKP ALEDLRQGLM 240
  241 PVFESFKTRI MSMVEEASKK LNAQ

Type	Start	End	Confidence
Signal Peptide	1	18	0.99
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	264	0.99