YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|14039799
Protein type:	Transmembrane
Type Confidence:	0.72
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	27	0.55
Transmembrane Helix	28	46	0.48
Non-Cytoplasmic	47	74	0.64
Transmembrane Helix	75	98	0.78
Cytoplasmic	99	124	0.58
Transmembrane Helix	125	146	0.70
Non-Cytoplasmic	147	217	0.66
Transmembrane Helix	218	242	0.85
Cytoplasmic	243	257	0.72
Transmembrane Helix	258	280	0.78
Non-Cytoplasmic	281	297	0.88
Transmembrane Helix	298	319	0.90
Cytoplasmic	320	337	0.81
Transmembrane Helix	338	356	0.93
Non-Cytoplasmic	357	378	0.80
Transmembrane Helix	379	398	0.62
Cytoplasmic	399	405	0.51
Transmembrane Helix	406	428	0.85
Non-Cytoplasmic	429	447	0.67
Transmembrane Helix	448	472	0.86
Cytoplasmic	473	477	0.68
Transmembrane Helix	478	497	0.83
Non-Cytoplasmic	498	708	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAATLPLCAA LRSPVSSRRF APIHKTDVPF QFNVVLSPFF GSVAIGGRIF PRLPAAKQET  60
   61 DQDEVGFDQQ PSQELAIASA CLVGVLTGVS VVLFNNCVHL LRDFSWDGIP DRGASWLREA 120
  121 PIGSNWLRVI LVPTIGGLVV SILNQLRESA GKSTGDSHSS LDRVKAVLRP FLKTVAACVT 180
  181 LGTGNSLGPE GPSVEIGASI AKGVNSLFNK SPQTGFSLLA AGSAAGISSG FNAAVAGCFF 240
  241 AVESVLWPSS STDSSTSLPN TTSMVILSAV TASVVSEIGL GSEPAFKVPD YDFRSPELPL 300
  301 YLLLGALCGL VSLALSRCTS SMTSAVDSLN KDAGIPKAVF PVMGGLSVGI IALVYPEVLY 360
  361 WGFQNVDILL EKRPFVKGLS ADLLLQLVAV KIAATAWCRA SGLVGGYYAP SLFIGGAAGM 420
  421 AYGKFIGLAL AQNPDFNLSI LEVASPQAYG LGMAATLAGV CQVPLTAVLL LFELTQDYRI 480
  481 VLPLLGAVGM SSWITSGQSK RQETRETKET RKRKSQEAVQ SLTSSDDESS TNNLCEVESS 540
  541 LCLDDSLNQS EELPKSIFVS EAMRTRFATV MMSTSLEEAL TRMLIEKQSC ALIVDPDNIF 600
  601 LGILTLSDIQ EFSKARKEGN NRPKDIFVND ICSRSGGKCK VPWTVTPDMD LLAAQTIMNK 660
  661 HELSHVAVVS GSIDAPRIHP VGVLDRECIT LTRRALATRM YLLNSLYL