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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|1079095
Protein type: Transmembrane
Type Confidence: 0.84
Topology Confidence: 0.40
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNMPRGVTK SKSKRGKIKM ENDMAAAAAT TAKTTACTLG HICVLCRQEM LLDTCCCRQA  60
   61 VEAVDSPASS EEAYSSSNSS SCQASSEISA EEVWFLSHDD IVLCRRPKFD EVETTGKKRD 120
  121 VKCSGHQCSN ECDDGSTKNN RQQRENFNIF SNCHNILRTL HSLLLLMFNC GIFNKRRRRQ 180
  181 HQQQHHHHYQ HHHQQHHQQH LQRQQANVSY TKFLLLLQTL AAATTRLSLS PKNYKQQQQL 240
  241 QHNQQLPRAT PQQKQQEKDR HKCFHYKHNY SYSPGISLLL FILLANTLAI QAVVLPAHQQ 300
  301 HLLHNDIADG LDKTALSVSG TQTRWPRSES NPTMRLSQNV KPCKSMDIRN MVSHFNQLEN 360
  361 CTVIEGFLLI DLINDASPLN RSFPKLTEVT DYIIIYRVTG LHSLSKIFPN LSVIRGNKLF 420
  421 DGYALVVYSN FDLMDLGLHK LRSITRGGVR IEKNHKLCYD RTIDWLEILA ENETQLVVLT 480
  481 ENGKEKECRL SKCPGEIRIE EGHDNTAIEG ELNASCQLHN NRRLCWNSKL CQTKCPEKCR 540
  541 NNCIDEHTCC SQDCLGGCVI DKNGNESCIS CRNVSFNNIC MDSCPKGYYQ FDSRCVTANE 600
  601 CITLTKFETN SVYSGIPYNG QCITHCPTGY QKSENKRMCE PCPGGKCDKE CSSGLIDSLE 660
  661 RAREFHGCTI ITGTEPLTIS IKRESGAHVM DELKYGLAAV HKIQSSLMVH LTYGLKSLKF 720
  721 FQSLTEISGD PPMDADKYAL YVLDNRDLDE LWGPNQTVFI RKGGVFFHFN PKLCVSTINQ 780
  781 LLPMLASKPK FFEKSDVGAD SNGNRGSCGT AVLNVTLQSV GANSAMLNVT TKVEIGEPQK 840
  841 PSNATIVFKD PRAFIGFVFY HMIDPYGNST KSSDDPCDDR WKVSSPEKSG VMVLSNLIPY 900
  901 TNYSYYVRTM AISSELTNAE SDVKNFRTNP GRPSKVTEVV ATAISDSKIN VTWSYLDKPY 960
  961 GVLTRYFIKA KLINRPTRNN NRDYCTEPLV KAMENDLPAT TPTKKISDPL AGDCKCVEGS1020
 1021 KKTSSQEYDD RKVQAGMEFE NALQNFIFVP NIRKSKNGSS DKSDGAEGAA LDSNAIPNGG1080
 1081 ATNPSRRRRD VALEPELDDV EGSVLLRHVR SITDDTDAFF EKDDENTYKD EEDLSSNKQF1140
 1141 YEVFAKELPP NQTHFVFEKL RHFTRYAIFV VACREEIPSE KLRDTSFKKS LCSDYDTVFQ1200
 1201 TTKRKKFADI VMDLKVDLEH ANNTESPVRV RWTPPVDPNG EIVTYEVAYK LQKPDQVEEK1260
 1261 KCIPAADFNQ TAGYLIKLNE GLYSFRVRAN SIAGYGDFTE VEHIKVEPPP SYAKVFFWLL1320
 1321 GIGLAFLIVS LFGYVCYLHK RKVPSNDLHM NTEVNPFYAS MQYIPDDWEV LRENIIQLAP1380
 1381 LGQGSFGMVY EGILKSFPPN GVDRECAIKT VNENATDRER TNFLSEASVM KEFDTYHVVR1440
 1441 LLGVCSRGQP ALVVMELMKK GDLKSYLRAH RPEERDEAMM TYLNRIGVTG NVQPPTYGRI1500
 1501 YQMAIEIADG MAYLAAKKFV HRDLAARNCM VADDLTVKIG DFGMTRDIYE TDYYRKGTKG1560
 1561 LLPVRWMPPE SLRDGVYSSA SDVFSFGVVL WEMATLAAQP YQGLSNEQVL RYVIDGGVME1620
 1621 RPENCPDFLH KLMQRCWHHR SSARPSFLDI IAYLEPQCPN SQFKEVSFYH SEAGLQHREK1680
 1681 ERKERNQLDA FAAVPLDQDL QDREQQEDAT TPLRMGDYQQ NSSLDQPPES PIAMVDDQGS1740
 1741 HLPFSLPSGF IASSTPDGQT VMATAFQNIP AAQGDISATY VVPDADALDG DRGYEIYDPS1800
 1801 PKCAELPTSR SGSTGGGKLS GEQHLLPRKG RQPTIMSSSM PDDVIGGSSL QPSTASAASS1860
 1861 NASSHTGRPS LKKTVADSVR NKANFINRHL FNHKRTGSNA SHKSNASNAP STSSNTNLTS1920
 1921 HPVAMGNLGT IESGGSGSAG SYTGTPRFYT PSATPGGGSG MAISDNPNYR LLDESIASEQ1980
 1981 ATILTTSSPN PNYEMMHPPT SLVSTNPNYM PMNETPVQMA GVTISHNPNY QPMQAPLNAR2040
 2041 QSQSSSDEDN EQEEDDEDED DDVDDEHVEH IKMERMPLSR PRQRALPSKT QPPRSRSVSQ2100
 2101 TRKSPTNPNS GIGATGAGNR SNLLKENWLR PASTPRPPPP NGFIGREA

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