YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67847456, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNTMSSITA LVLAAFVGYG GAWYLGAVEG NFSLLLFLAT VVTGIYWLAE RFYFLPQRRK  60
   61 AVAVLEQTAA KRQAELAKMG ISQVDSNVSE ARTRLIMQPW WLDWTAGLFP VIVVVFLLRS 120
  121 FLFEPFKIPS GSMIPTLLIN DLILVNKFHY GVRLPVINTK LFDNHSPQRG DVMVFRYPPK 180
  181 PSLDYIKRVV GVPGDEVAYL NKKLTINGKP LPKTSLADFF DEDALRYAKQ FQETNSARTY 240
  241 RLLNDDDRPA FVAGAEDFPF KQNCRYSSEG VVCKVPEGHY FMMGDNRDNS LDSRYWGFVP 300
  301 EKNIVGKAFF VWMNFGNLKR IGSFQ

Type	Start	End	Confidence
Cytoplasmic	1	6	0.92
Transmembrane Helix	7	27	0.91
Non-Cytoplasmic	28	31	0.87
Transmembrane Helix	32	54	0.85
Cytoplasmic	55	99	0.97
Transmembrane Helix	100	122	0.91
Non-Cytoplasmic	123	325	0.82