YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54032099, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSALLTQFVN LLGAVLLMLA FAMIAQRRIL SLIHLFTMQG ATLVLATGVV GYVTNQPHLY  60
   61 ISAGVTFVLK VLLIPYLLHR VIDRLNIRWD VETLINIPTT MLIGIVVVIF AFDLAMPIAR 120
  121 LSSALASGTL GIALACVLLS FLMMITRAKA VPQVIGFLAM ENGLFFAATS ATYGMPMVVE 180
  181 LGIALDVLIG VLILGVFMFQ IREQFDSLDI SHLEKLKDD

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.83
Transmembrane Helix	6	25	0.90
Cytoplasmic	26	31	0.83
Transmembrane Helix	32	53	0.88
Non-Cytoplasmic	54	58	0.83
Transmembrane Helix	59	79	0.93
Cytoplasmic	80	93	0.88
Transmembrane Helix	94	115	0.91
Non-Cytoplasmic	116	123	0.72
Transmembrane Helix	124	145	0.92
Cytoplasmic	146	153	0.80
Transmembrane Helix	154	173	0.92
Non-Cytoplasmic	174	180	0.72
Transmembrane Helix	181	201	0.92
Cytoplasmic	202	219	0.96