YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91700988, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSETVIIAGA GQAAGQAVAS LRQEGFDGRI VLVGAEPVLP YQRPPLSKAF LAGTLPLERL  60
   61 FLKPPAFYEQ ARVDTLLGVA VTELDAARRQ VRLDDGRELA FDHLLLATGG RARRLDCPGA 120
  121 DHPRLHYLRT VADVDGIRAA LRPGARLVLI GGGYVGLEIA AVAAKLGLAV TVLEAAPTVL 180
  181 ARVTCPAVAR FFESVHRQAG VTIRCATTVS GIEGDASLAR VVTGDGERID ADLVIAGIGL 240
  241 LPNVELAQAA GLVCDNGIVV DEECRTSVPG IFAAGDCTQH PNAIYDSRLR LESVHNAIEQ 300
  301 GKTAAAAMCG KARPYRQVPW FWSDQYDLKL QTAGLNRGYD QVVMRGSTDN RSFAAFYLRD 360
  361 GRLLAVDAVN RPVEFMVAKA LIANRTVIAP ERLADERIAA KDLAG

Type	Start	End	Confidence
Signal Peptide	1	19	0.66
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	405	0.97