YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67909548, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAKTGLFYV FAAVLLFAAF RVITARNPVH AALYLVLAFF QAAAVWILLK AEFLAITLVL  60
   61 VYVGAVMVLF LFVVMMLDIN IDSVRKGFWK HFPLAGTVGA IIALEMSYVL MGGFREPPKA 120
  121 ASAPGQIGAQ VSNTKELGKL LYSEYLYPLE VAAVILLVAM IAAIALTLRQ RKDTKYINPS 180
  181 DQIRVKRGDR VSLVKMKSVV AAPATLGTTA PVEEKQS

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.81
Transmembrane Helix	6	24	0.92
Cytoplasmic	25	30	0.76
Transmembrane Helix	31	49	0.92
Non-Cytoplasmic	50	55	0.68
Transmembrane Helix	56	77	0.92
Cytoplasmic	78	87	0.80
Transmembrane Helix	88	110	0.85
Non-Cytoplasmic	111	145	0.91
Transmembrane Helix	146	168	0.89
Cytoplasmic	169	217	0.90