YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76261586, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGVLTLTRT SVGKKVIMAL TGFVLVGFVV FHMYGNLKMY QGPEVYNAYA AGLRELGYPI  60
   61 FGHEHLLWIA RFILLASVFL HIWAATSLTL QSRRSLQASS ISTVRRYGQH KRQSGYADYT 120
  121 MRFGGVLIFF FIIYHILHLT FGVVGYEPGQ FIHPHGDVYE TYNNVVYGFQ NPLIVGFYLL 180
  181 TMVFLALHLY HGVWSMFQTL GWNNRTYDRL LRGLAIVVAA AVFIGNISFP LAVYFGFVA

Type	Start	End	Confidence
Cytoplasmic	1	15	0.91
Transmembrane Helix	16	35	0.94
Non-Cytoplasmic	36	66	0.96
Transmembrane Helix	67	85	0.96
Cytoplasmic	86	118	0.91
Transmembrane Helix	119	139	0.90
Non-Cytoplasmic	140	173	0.90
Transmembrane Helix	174	194	0.92
Cytoplasmic	195	212	0.88
Transmembrane Helix	213	234	0.93
Non-Cytoplasmic	235	239	0.78