YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|53796678
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEVTLSNEE IARYSRHLIM PEVGMAGQRR LKQGSVLLIG TGGLGSPLAL YLAAAGVGHI  60
   61 GLVDFDVVDA SNLQRQIVHG TSTVGVAKTE SAKRRLQDLN PYIEITTYET QITSQNALDL 120
  121 MRPYDVIVDG TDNFPTRYLT NDACVLLGKP NVYGSIFRFE GQATVFSARD GGPCYRCLYP 180
  181 EPPPPGLVPS CAEGGVLGVL PGVIGTIQAT EVIKLLTGIG EPLIGRLLLY DALSMRFREL 240
  241 KLRRNPSCPV CGDHPTITEL IDYEQFCGIA PEEPTLSNQF EITPRELAEW LERPDRPFLL 300
  301 DVRNPYEVAI ASIPGTDKLI PLDQLPERIN ELDSAREMVV YCRSGVRSGR AVELLKTAGF 360
  361 RKVKNLVGGI LRWADDVDPS LPKY

Type	Start	End	Confidence
Cytoplasmic	1	34	0.81
Transmembrane Helix	35	55	0.77
Non-Cytoplasmic	56	384	0.94