YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|53796051
Protein type:	Globular with Signal Peptide
Type Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLPRLLLAA PMSGSGKTTL TAGLIGALRQ RGLRIAPFKC GPDYIDPGYH ALAAERPCHN  60
   61 LDSWLMPVDQ IAGILARRSG DADLALIEGV MGLFDGYGTD DDTGSSAHIA RLTATPVIIV 120
  121 LDARAMARTA AALVAGLRDF DRRLHIGGVI LNRVGSPRHA TIIQTAIEQT IGVPVLGYLE 180
  181 RAEGLTLPER HLGLVPVAEP GHWQEWLTAV TNRIAATVDL DRLLAIARSA PPLTIPPLPT 240
  241 VTATDQSNRP VIAVARDEAF NFIYPDNLDL LEAAGARLAF FSPLHDRALP AATAAIYLCG 300
  301 GFPELYAAQL SANQSLRDAI RTAAASGMPV YAECGGLMYL TESLIDQHGQ TFPMVGLLPG 360
  361 HSRMTRRLTL GYRTVVAQTD TWLWHAGETI RGHEFHYSVW EERPPTVTPL YTCLPDALRP 420
  421 QSATEGIVNG QTLASYIHLH FLSCPQAATR FVAAAGRYQT GQKEERYTNR GDAV

Type	Start	End	Confidence
Signal Peptide	1	21	0.91
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	474	0.98