YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3928843
Protein type:	Globular with Signal Peptide
Type Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHLNAAAAQ ASSSLYGVSM AEYGDVGVSS MMALMTQHEP HERDSILTTS MPSSFSSFHG  60
   61 HAECLLSAAM FQASQGDHKL KRQPEMDQLV SEQAVMSDSS MPSVKTEGCS SLRNQFEIRR 120
  121 EQTGNCYTDQ SSNAPVSPLV TSLVPQAGGE ARMITSLEAD SSHFSGGKEA EAIKAKILAH 180
  181 PQYPSLLGAY IDCQKIGAPP EVVARLDALT HEYENQQHRT TVSIGMDPEL DQFMEAYCEM 240
  241 LTKYHEELTK PFKEAMSFLK KIEAQLNSLS KGTIRISPSA ENDEKTEGGA SSEEVEDGSG 300
  301 GETDFQEVDH HAVEDRELKD HLLRKYSGYL SSLKQEFMKK KKKGKLPKDA RQKLLDWWTV 360
  361 HYKWPYPSET EKIALAECTG LDQKQINNWF INQRKRHWKP SEDMQLMAMD GQSPHGATLY 420
  421 VERHLMTEGY HLDC

Type	Start	End	Confidence
Signal Peptide	1	21	0.54
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	434	0.99