YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3983358
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KANNTTTSAL WLQITYVTME AAIGLCAVVG NMLVIWVVKL NRTLRTTTFY FIVSLALADI  60
   61 AVGVLVIPLA IAVSLEVQMH FYACLFMSCV LLVFTHASIM SLLAIAVDRY LRVKLTVRYR 120
  121 TVTTQRRIWL FLGLCWLVSF LVGLTPMFGW NRKVTLELSQ NSS

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.92
Transmembrane Helix	17	38	0.91
Cytoplasmic	39	48	0.85
Transmembrane Helix	49	72	0.94
Non-Cytoplasmic	73	81	0.81
Transmembrane Helix	82	107	0.91
Cytoplasmic	108	127	0.95
Transmembrane Helix	128	150	0.94
Non-Cytoplasmic	151	163	0.99