YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|124266218, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.92
Transmembrane Helix	8	26	0.96
Non-Cytoplasmic	27	31	0.86
Transmembrane Helix	32	52	0.92
Cytoplasmic	53	87	0.96
Transmembrane Helix	88	109	0.91
Non-Cytoplasmic	110	116	0.78
Transmembrane Helix	117	139	0.92
Cytoplasmic	140	159	0.90
Transmembrane Helix	160	182	0.94
Non-Cytoplasmic	183	189	0.77
Transmembrane Helix	190	209	0.95
Cytoplasmic	210	217	0.79
Transmembrane Helix	218	238	0.89
Non-Cytoplasmic	239	254	0.87
Transmembrane Helix	255	277	0.91
Cytoplasmic	278	284	0.90
Transmembrane Helix	285	305	0.93
Non-Cytoplasmic	306	324	0.86
Transmembrane Helix	325	345	0.94
Cytoplasmic	346	361	0.90
Transmembrane Helix	362	385	0.89
Non-Cytoplasmic	386	405	0.72
Transmembrane Helix	406	424	0.79
Cytoplasmic	425	433	0.85
Transmembrane Helix	434	454	0.87
Non-Cytoplasmic	455	463	0.81
Transmembrane Helix	464	486	0.87
Cytoplasmic	487	509	0.92
Transmembrane Helix	510	530	0.92
Non-Cytoplasmic	531	544	0.81
Transmembrane Helix	545	566	0.92
Cytoplasmic	567	572	0.94
Transmembrane Helix	573	596	0.90
Non-Cytoplasmic	597	638	0.95
Transmembrane Helix	639	660	0.92
Cytoplasmic	661	688	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHLRKHLPW VLVAIVGAFA LATIALQRGE AISALWVVVA ALCVYLIAYR YYSLFLATKV  60
   61 LGLDPNRQTP AHRHNDGLDY VPTNKYVLYG HHFAAIAGAG PLVGPVLAAQ MGYLPGMLWL 120
  121 LAGVVFAGAV QDFIVLFIST RRDGRSLGEL VKQEMGTVPG VITLFGAFMI MIIILAVLAL 180
  181 IVVKALAHSP WGAVTVGLTI PVALFMGIYS RYLRPGRIGE VSAIGFVLLM AAIWLGGWVH 240
  241 EHAALSALFD FDGKALTWML IGYGFIASVL PVWLLLAPRD YLSTFLKIGT IIALAIGILI 300
  301 VAPTLQMPAL TQFAQGNGPV WSGNLFPFLF ITIACGAVSG FHALISSGTT PKMLENETHA 360
  361 RFIGYGGMLA ESFVAIMALV AASVIQPGIY FAMNSPAALI GTTPEAVAQT LSTWGFVITP 420
  421 DVLIQTAKDV GENTILARAG GAPTLAVGMA HILHQVVGGP AMMAFWYHFA ILFEALFILT 480
  481 AVDAGTRAGR FMLQDLLGNF IPAMKRTDSL PANLIATGLC VATWGYFLYA GVVDPLGGIN 540
  541 TLWPLFGISN QMLAAVALTL GTVVLFKMKR QRYAWVTIVP AAWLLICTLT AGWLKLFSPD 600
  601 PKVGFLAHAQ KFGDALAQGT VLAPAKSLDA MRHIVVNDYI NASLCVLFML VVVSTVFYAV 660
  661 KSILKALGNQ SPTVRETPFE PMPQGAGG