YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|72394074, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQEKNKAVS DLLEEVTNNT DVDRITLFEL KSALHARGFG ILMLLFSLPL SIPLPVPPGY  60
   61 TTIFSIPLLM FAFQMLLGFQ VPWMPSWLEK KSFKRTTLAL IIEKTAPILR KAEKLTKPRL 120
  121 LFIFNSVGEK VIAFISLLCA VSIAIPLPLT NFIPAGGVSI MSLGLLNKDG MMVILGVLLS 180
  181 LFGIVVTTMV IILGPKLVVS MFSFLSKFT

Type	Start	End	Confidence
Cytoplasmic	1	33	0.98
Transmembrane Helix	34	54	0.92
Non-Cytoplasmic	55	62	0.73
Transmembrane Helix	63	84	0.91
Cytoplasmic	85	130	0.90
Transmembrane Helix	131	153	0.84
Non-Cytoplasmic	154	170	0.76
Transmembrane Helix	171	194	0.90
Cytoplasmic	195	209	0.74