YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78065224, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.89
Transmembrane Helix	7	25	0.94
Non-Cytoplasmic	26	31	0.67
Transmembrane Helix	32	50	0.94
Cytoplasmic	51	59	0.77
Transmembrane Helix	60	79	0.89
Non-Cytoplasmic	80	105	0.89
Transmembrane Helix	106	129	0.91
Cytoplasmic	130	141	0.77
Transmembrane Helix	142	161	0.95
Non-Cytoplasmic	162	181	0.88
Transmembrane Helix	182	202	0.96
Cytoplasmic	203	234	0.94
Transmembrane Helix	235	255	0.93
Non-Cytoplasmic	256	271	0.83
Transmembrane Helix	272	296	0.79
Cytoplasmic	297	307	0.81
Transmembrane Helix	308	329	0.89
Non-Cytoplasmic	330	344	0.90
Transmembrane Helix	345	379	0.70
Cytoplasmic	380	380	0.25
Transmembrane Helix	381	408	0.68
Non-Cytoplasmic	409	429	0.66
Transmembrane Helix	430	452	0.89
Cytoplasmic	453	453	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAVQGSMLL VFTLIAIAAL ILMIARYKIY PFLVLIIVSL GLGLVVGMPM DKIVKSFEAG  60
   61 TGGTLGHIAI VVGLGTMLGK MMAESGGAER IATTLIDWFG EKNIHWAMMF VAIIVGLPVF 120
  121 FEVGFVLLIP IAFNVAKRTG KSLLVVGLPM VAGLSVVHGL IPPHPAALLA VQQYGADIGK 180
  181 TIAFGLIVGV PTAIIAGPLF ALTISKFVKL PENNPLAAQF VDTHTDGRKR ELPSFGITLF 240
  241 TILLPVVLML VGSWADLLFT PKSLPNNLLR FAGNSDVALL IAVLVSFFTF GKLQGFNRDQ 300
  301 IQKFCGECLA PIAGITLIVG AGGGFGGVLR DSGISQQIVE TAKHAHLSPL LLGWFVAALM 360
  361 RLATGSATVA MTTACGIVAP IAAAAGTTVS PELLVLATGS GSLIFSHVND GGFWLIKEYF 420
  421 GMTVGQTFKT WSLLETIISV LGLGFTLLLS MVL