YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46312619, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.94
Transmembrane Helix	9	28	0.94
Non-Cytoplasmic	29	34	0.77
Transmembrane Helix	35	56	0.87
Cytoplasmic	57	61	0.66
Transmembrane Helix	62	80	0.87
Non-Cytoplasmic	81	86	0.67
Transmembrane Helix	87	107	0.94
Cytoplasmic	108	114	0.69
Transmembrane Helix	115	134	0.88
Non-Cytoplasmic	135	161	0.84
Transmembrane Helix	162	182	0.93
Cytoplasmic	183	207	0.85
Transmembrane Helix	208	231	0.87
Non-Cytoplasmic	232	247	0.86
Transmembrane Helix	248	273	0.87
Cytoplasmic	274	288	0.76
Transmembrane Helix	289	307	0.87
Non-Cytoplasmic	308	594	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTMVRNKTF WVFLVVLFAL PVLPGALQVP EYWITLLNYI GLYAIVAIGL VLLTGVGGMT  60
   61 SFGQAAFVGI GAYATALLTT RYGVSPWLAL IVGVVLTALV ALVLGAVTMR LSGHFLPLGT 120
  121 IAWGLALFYL FGNLELLGKY DGINGIPALN LFGIELESGR SLYFLIWAVV LAAIVSVQNL 180
  181 LNSRPGRAIR ALRGGGVMAE AMGVNTAWMR VVIFVYAAVL AAVSGFLYAH LQRAVNPTPF 240
  241 GLNHGIEFLF MAVVGGVSHV WGAVLGAAIL TVLQDYLQTL LPKLLGSEGN FEIIVFGVLM 300
  301 VLLLQYARQG VWPFVARLFP RGPRAHVPEH ADPLPQRAKP TAGEPLLVVD NARKQFGGLV 360
  361 AVNDVSFDVK AGQIIGLIGP NGAGKSTTFN LVTGVLKPTG GTITFRGERI DGLTSRQIVR 420
  421 RGIGRTFQHV KLLPAMTVLE NVAIGAHLRG HTGVWRSVAR LNAHEEAQLL AEAAQQIRRV 480
  481 GLEKHMYDEA GSLALGQQRI LEIARALCCD PTLLLLDEPA AGLRYQEKQQ LGDLLRRLKA 540
  541 EGMSVLLVEH DMDFVMNLTD RLVVMEFGTR IAEGLPQDVQ QDPAVLEAYL GGVE