YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46312026, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQEATVVLK TPSPAAQGRA AKRLDPVSES RVVRWLLTGI ALAFLAFFLV VPLAAVFVEA  60
   61 LRKGVGFYLE SLADPDAWSA IKLTLTVAAI AVPLNLVFGV CASWAIAKFE FRGKALLTTL 120
  121 IDLPFSVSPV ISGLVYVLLF GAQGWLGPWL QDHDVQIIFA VPGIVLATIF VTFPFVAREL 180
  181 IPLMQAQGTD EEEAARVLGA SGWQIFRRVT LPNVKWGLLY GVILCNARAM GEFGAVSVVS 240
  241 GHIRGQTDTM PLHVEILYNE YNFAAAFAVA SVLALLALVT LALKLLAERH LAAELAGARD 300
  301 TVPAHAGPVA AVSSKS

Type	Start	End	Confidence
Cytoplasmic	1	34	0.96
Transmembrane Helix	35	58	0.89
Non-Cytoplasmic	59	84	0.89
Transmembrane Helix	85	106	0.92
Cytoplasmic	107	118	0.84
Transmembrane Helix	119	140	0.88
Non-Cytoplasmic	141	156	0.78
Transmembrane Helix	157	177	0.95
Cytoplasmic	178	215	0.96
Transmembrane Helix	216	236	0.85
Non-Cytoplasmic	237	262	0.87
Transmembrane Helix	263	283	0.95
Cytoplasmic	284	316	0.94