YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46311103, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTFVLRRVG MVIPTFIGIT ILAFALIHLI PGDPIEVMMG ERGVDPAMHA EAMKRLGLDQ  60
   61 PLPMQYLHYI GRALHGDLGT SIITNTSVAG EFFARFPATV ELSLCALVFA LAVGLPAGVI 120
  121 AALRRGSVVD HGVMGTALTG YSMPIFWWGL ILIMVFSSYL GWTPVSGRIA VEYDFPHPTG 180
  181 FMLIDALLAP DEGSFKSAVS HLILPAIVLG TIPLAVIARM TRSSMLEVLR EDYIRTARAK 240
  241 GLSPARVVVV HALRNALIPV VTVIGLQIGT LLAGAVLTET LFSWPGVGKW LIDAIGRRDY 300
  301 PVVQGGILLI ATLVIVVNLV VDLLYGVLNP RIRHTR

Type	Start	End	Confidence
Cytoplasmic	1	8	0.94
Transmembrane Helix	9	30	0.93
Non-Cytoplasmic	31	101	0.87
Transmembrane Helix	102	123	0.92
Cytoplasmic	124	136	0.68
Transmembrane Helix	137	162	0.76
Non-Cytoplasmic	163	197	0.82
Transmembrane Helix	198	218	0.91
Cytoplasmic	219	255	0.92
Transmembrane Helix	256	278	0.87
Non-Cytoplasmic	279	305	0.86
Transmembrane Helix	306	328	0.91
Cytoplasmic	329	336	0.94