YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46311080, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSQANSLIN PDARAGLASP APGAAAAAAL PGAGGAGADF GLGGFAERIP GISRMKGNPK  60
   61 LPFLIAVAFA VAVITALVLW SRAPDYRVLY SNLSDRDGGA IIAALQQANV PYKFADAGGA 120
  121 ILVPSNQVHE TRLKLAAMGL PKGGSVGFEL MDNQKFGISQ FAEQINYQRA LEGELQRTIE 180
  181 SINAVRGARV HLAIPKPSVF VRDKEAPSAS VFVDLYPGRV LDEGQVQAIT RMVSSGVPDM 240
  241 PAKNVTIVDQ DGNLLTQTAS ASGLDASQLK YVQQVEHNTQ KRIDAILAPI FGTGNARSQV 300
  301 SADLDFSKIE QTSESYGPNG NPQQSAIRSQ QTSSATELAQ GGASGVPGAL SNTPPQPASA 360
  361 PIVAGNGQNA PQTTPVSDRK DQTTNYEVDK TIRHLEQPMG SVKRLSVAVV VNYQPVADAK 420
  421 GHVTMQPLPP AKLAQVEQLV KDAMGYDEKR GDSVNVVNSA FSTVSDPYAD LPWWRQPDMI 480
  481 AMAKEAAKWL GIAAAAAALY FMFVRPAMRR AFPPPEPVAP ALAAPEDSVA LDGLPGPEKS 540
  541 EEPDALLLGF ESEKNRYERN LDYARTIARQ DPKIVATVVK NWVSDER

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.65
Transmembrane Helix	21	43	0.78
Cytoplasmic	44	60	0.67
Transmembrane Helix	61	81	0.94
Non-Cytoplasmic	82	485	0.75
Transmembrane Helix	486	504	0.66
Cytoplasmic	505	587	0.47